Publications

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biomathematics, protein landscape analysis, protein evolution, machine learning Dana Matthews biomathematics, protein landscape analysis, protein evolution, machine learning Dana Matthews

Computational and Experimental Exploration of Protein Fitness Landscapes: Navigating Smooth and Rugged Terrains

Mahakaran Sandhu, John Z Chen, Dana S Matthews, Matthew A Spence, Sacha B Pulsford, Barnabas Gall, Joe A Kaczmarski, James Nichols, Nobuhiko Tokuriki, Colin J Jackson

Computational and Experimental Exploration of Protein Fitness Landscapes: Navigating Smooth and Rugged Terrains

Biochemistry, 2025

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ancestral sequence reconstruction, machine learning, protein engineering, biomathematics Dana Matthews ancestral sequence reconstruction, machine learning, protein engineering, biomathematics Dana Matthews

Leveraging ancestral sequence reconstruction for protein representation learning

Dana S. Matthews, Matthew A. Spence, Adam C. Mater, James Nichols, Sacha B. Pulsford, Mahakaran Sandhu, Joe A. Kaczmarski, Charlotte M. Miton, Nobuhiko Tokuriki, Colin J. Jackson

Leveraging ancestral sequence reconstruction for protein representation learning

Nature Machine Intelligence, 2024

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A full list of publications can be found on Google Scholar: